A breakthrough in research could
transform how colorectal cancer is detected.
Scientists have developed a new stool test that identifies up to 90 per cent of
colorectal cancer cases without the need for a colonoscopy.
Using artificial
intelligence, researchers analysed hidden signals in gut bacteria to detect
colorectal cancer with striking accuracy, rivalling one of medicine’s most
trusted diagnostic tools.
Colorectal cancer is the second leading cause of cancer-related deaths worldwide. When detected early, it is often highly treatable. However, colonoscopies, the
primary screening method used today, can be costly and uncomfortable, discouraging many people from getting tested on time.Researchers at the University of
Geneva (UNIGE) used machine learning to create the first detailed catalogue of
human gut bacteria at a level precise enough to reveal how different microbial
subgroups function in the body.
They then applied this data
to detect colorectal cancer based on bacteria found in simple stool samples,
offering a non-invasive and low-cost alternative.
The findings, published in
Cell Host & Microbe, could also help scientists better understand how gut
microbiota influence overall health and disease.
Many cases of colorectal
cancer are diagnosed at a late stage, when treatment options are more limited.
This underscores the urgent need for easier and less invasive screening
methods, especially as cases continue to rise among younger adults for reasons
that remain unclear.
Scientists have long known that gut
microbiota play a role in colorectal cancer. However, translating that
knowledge into practical medical tools has been challenging because different
strains within the same bacterial species can behave very differently. Some may
contribute to cancer development, while others have no effect.
The research required
analysing vast amounts of biological data. By combining their bacterial
catalogue with existing clinical datasets, the team developed a model capable
of identifying colorectal cancer using only stool samples. The results exceeded
expectations.
Matija Trickovic, a PhD
student in Mirko Trajkovski’s lab and the study’s first author, explained, “Our
method detected 90 per cent of cancer cases, a result very close to the 94 per
cent detection rate achieved by colonoscopies and better than all current
non-invasive detection methods.”
With additional clinical
data, the model could become even more accurate and eventually match the
performance of colonoscopies. In practice, this type of test could be used for
routine screening, with colonoscopies reserved for confirming positive cases.
A clinical trial is now being prepared
in partnership with the Geneva University Hospitals (HUG) to determine which
cancer stages and lesions the method can detect most effectively.
The implications extend far
beyond colorectal cancer. By examining differences between subspecies within
the same bacterial species, researchers may uncover how gut microbes influence a wide range of
health conditions.

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